This is an *incomplete* list of papers that I have found relevant to my topic of interest:
S. Gopal, S. Paul, D. Raychaudhuri,
" Investigation of the TCP Simultaneous Send problem in 802.11 Wireless Local Area Networks",
IEEE ICC 2005, May 16-20, Seoul, South Korea.
S. Gopal, D. Raychaudhuri, "Experimental Evaluation of the TCP
Simultaneous Sent problem in 802.11 Wireless Local Area Networks",
ACM SIGCOMM Workshop on Experimental Approaches to Wireless Network Design and Analysis (EWIND-05), August 22nd 2005, Philadelphia.
 S. Gopal, K. Ramaswamy, C. Wang, "On Video Multicast over Wireless LANs", IEEE Conference on Multimedia and Expo (ICME), Taipei, Taiwan, April 2004
 The libmac feature of ORBIT. See webpage http://www.orbit-lab.org/wiki/Documentation/Libmac
 V. G. Cerf and R. E. Kahn, "A protocol for packet network interconnection", IEEE Transactions on Communication Technology., vol. COM-22, V 5, pp. 627-641, May 1974.
 D.D.Clark, M.L. Lambert, L. Zhang, "NETBLT: a High Throughput Transport Protocol", ACM SIGCOMM 1987
 Sundaresan, V. Anantharaman, H.-Y. Hsieh, and R. Sivakumar. ATP: A reliable transport protocol for ad-hoc networks. In Proceedings of 4th ACM MobiHoc, pp. 64–75, 2003.
 M C Chan and Ramchandran Ramjee, "TCP/IP performance over 3G wireless link with rate and delay variation", ACM MOBICOM 2002
 P. Sudame and B.R. Badrinath, On providing support for protocol adaptation in mobile wireless networks, Mobile Networks and Applications 2001, Vol.6, No. 1, pp. 43-55.
 K.Chen, S. H. Shan and K. nahrstedt, Cross-Layer design for data accessibility in mobile ad hoc networks, Wireless Personal Communications '02
 M. Chinta, A. Helal, ILC-TCP: An Interlayer Collaboration Protocol for TCP Performance Improvement in Mobile and Wireless Environments, WCNC 03
 T.Goff, J. Moronski, D.S. Phatak, V. Gupta, Freeze-TCP: A true end-to-end TCP enhancement mechanism for mobile environments, INFOCOM 2000
 A Bakre and B. Badrinath, “I-TCP: Indirect TCP for Mobile Hosts,” in Proc. Of 15th International Conference on Distributed Computing Systems (ICDCS), Vancouver, Canada May 1995
 Xu, S.; Saadawi, T., "Revealing and solving the TCP instability problem in 802.11 based multi-hop mobile ad hoc networks", 54th Vehicular Technology Conference, 2001. Volume: 1
 Saadawi, T., Xu S., “Revealing TCP incompatibility problem in 802.11-based wireless multi-hop networks” , Global Telecommunications Conference, 2001. GLOBECOM '01. IEEE , 2001, Page(s): 2847 -2851 vol.5
 K. Xu, M. Gerla, L. Qi, and Y. Shu, “Enhancing TCP fairness in ad hoc wireless networks using neighborhood red,” in Proc. of ACM MOBICOM, San Diego, CA, USA, Sep. 2003, pp. 16–28.
 Z Fu, X Meng, S Lu , "How bad TCP can perform in wireless ad hoc network" , - IEEE ISCC (IEEE Symposium on Computers and Communications), 2002
 M. Gerla, K. Tang, R. Bagrodia, “TCP Performance in Wireless Multihop Networks”, IEEE WMCSA, Feb99
 G. Holland and N.H. Vaidya, “Impact of Routing and Link Layers on TCP Performance in Mobile Ad-hoc Networks”, Proc. IEEE WCNC, Sept 99
 H-Y Hsieh, K-H Kim, Y Zhu, R. Sivakumar "A Receiver-Centric transport protocol for Mobile Hosts with Heterogeneous Wireless Interfaces", Mobicom 2003
 P. Sinha, T. Nandagopal, N. Venkitaraman, R. Sivakumar, V. Bharghavan, " WTCP: A Reliable Transport Protocol for Wireless Wide-Area Networks", Wireless Networks, Volume 8, 2002
 H. Balakrishnan, S. Seshan, E. Amir and R. Katz, "Improving TCP/IP performance over wireless networks", Proceedings of ACM MOBICOM, Nov 1995
 F.Wang and Y. Zhang. "Improving TCP performance over mobile ad-hoc networks with out-of-order detection and response", In Proc. of the ACM MOBIHOC, 2002.
 G. Holland and N. Vaidya, "Analysis of TCP performance over mobile ad hoc networks", In Proceedings of ACM MobiCom’99, Seattle, Washington, Aug. 1999.
 K. Chandran, S. Raghunathan, S. Venkatesan, and R. Prakash. "A feedback-based scheme for improving TCP performance in ad hoc wireless networks", IEEE Personal Communications Magazine, 8(1):34–39, Feb. 2001.
 R. Caceres, L. Iftode, "Improving the performance of Reliable Transport Protocols in Mobile Computing Environments", IEEE JSAC, Special Issue on Mobile Computing Network, 1994
 S Mascolo, C Casetti, M Gerla, M Sanadidi, R Wang, " TCP Westwood: Ends-to-End Bandwidth Estimation for Efficient Transport over Wired and Wireless networks", Proceedings of MOBICOM 2001
 L Xu, K Harfoush, I Rhee "Binary Increase Congestion Control (BIC) for Fast Long-Distance Networks",In Proceedings of IEEE INFOCOM, 2004
 Thomson, K., Miller, G.J., Wilder R.,"Wide-area Interent Traffic Patterns and Characteristics", Proc. IEEE Symposium on Computers and Communications, p. Athens, Greece, June 98, p. 74-78
 P. Gupta, P.R. Kumar, "The Capacity of wireless networks", IEEE Transactions on Information Theory, 2000
 J. Li, C. Blake, DSJ De Couto, H.I Lee, R. Morris, "Capacity of Ad Hoc Wireless networks", In Proceedings of MOBICOM 2001
 S. Bansal, R. Gupta, R. Shorey, I. Ali, A. Razdan, A. Mishra, "Energy Efficiency and Throughput for TCP traffic in Multi-Hop Wireless Networks", In Proceedings of INFOCOM 02
 Larry Peterson and Bruce Davie, "Computer Networks: A Systems Approach", Second edition.. Morgan Kaufmann publishers, 2000.
 IEEE 802.11, 1999 Edition (ISO/IEC 8802-11: 1999) Part 11: Wireless LAN Medium Access Control (MAC) and Physical Layer (PHY) Specifications
 IEEE 802.11b-1999 Supplement to 802.11-1999,Wireless LAN MAC and PHY specifications: Higher speed Physical Layer (PHY) extension in the 2.4 GHz band
 ORBIT: Open Access Research Testbed for Next-Generation Wireless Networks www.orbit-lab.org
 D. Raychaudhuri, I. Seskar, M. Ott, S. Ganu, K. Ramachandran, H. Kremo, R. Siracusa, H. Liu and M. Singh "Overview of the ORBIT Radio Grid Testbed for Evaluation of Next-Generation Wireless Network Protocols", to appear in the Proceedings of the IEEE Wireless Communications and Networking Conference (WCNC 2005)
 The OPNET simulator ; Website: http://www.opnet.com/
 Vikas Kawadia and P. R. Kumar, ``A Cautionary Perspective on Cross Layer Design.'' IEEE Wireless Communication Magazine. pp. 3-11, vol. 12, no. 1, February 2005
 K Fall, S Floyd. "Simulation-based Comparisons of Tahoe, Rent, and SACK TCP", ACM Computer Communication Review, 1996
 S Floyd, M Handley, J Padhye, J Widmer, "Equation-based congestion control for unicast applications", ACM SIGCOMM Computer Communication Review, 2000
 J. Padhye, V. Firoiu, D. Towsley, and J. Kurose. "Modeling TCP Throughput: A Simple Model and its Empirical Validation". SIGCOMM Symposium on Communications Architectures and Protocols, Aug. 1998.
 Kamerman, A.; Aben, G., “Net throughput with IEEE 802.11 wireless LANs”, IEEE WCNC. Sept 2000. Volume 2
Yi, S Shakkottai , "Hop-By-Hop Congestion Control over a Wireless
IEEE INFOCOM, 2004
 P. P. Mishra and H. Kanakia, “A hop by hop rate based congestion control scheme,” in Proceedings of ACM SIGCOMM, August 1992.
 Z. Wu, S. Ganu, I. Seskar, D. Raychaudhuri. " Experimental Investigation of PHY Layer Rate Control and Frequency Selection in 802.11-based Ad-Hoc Networks", ACM SIGCOMM Workshop on Experimental Approaches to Wireless Network Design and Analysis (EWIND-05), August 22nd 2005, Philadelphia.
 Praveen Gopalakrishnan, "Methods for predicting the throughput characteristics of rate-adaptive Wireless LANs", M.S. Thesis, WINLAB, ECE Dept., Rutgers University
 J.C. Lin, S. Paul "RMTP: A Reliable Multicast Transport Protocol", IEEE INFOCOM, 1996
 J. Liu and S. Singh, ATCP: TCP for Mobile Ad Hoc Networks, IEEE Journal on Selected Areas in Communications, 2001
 G. Wu, Y. Bai, J. Lai, A. Ogielski, "Interactions between TCP and RLP in wireless Internet", Proc. IEEE GLOBECOM'99, Brazil, Dec 1999.